TY - COMP T1 - A single cell atlas of the human liver tumor microenvironment AU - Massalha, Hassan AU - Bahar Halpern, Keren AU - Abu Gazala, Samir AU - Jana, Tamar AU - E. Massasa, Efi AU - E. Moor, Andreas AU - Pikarsky, Eli AU - Amit, Ido AU - Zamir, Gideon AU - Itzkovitz, Shalev DO - 10.5281/ZENODO.3742257 UR - https://zenodo.org/record/3742257 AB - Matlab scripts used to analyze data associated with the manuscript entitled "A single cell atlas of the human liver tumor microenvironment". *please used Matlab 2019b to run the following m files. Files: inputData.mat: mat contains all raw and preprocessed data used in the study Create_Interactions_Network.m: Matlab script used to calculate Ligand-Receptor interaction score between different cell types. The script creates panels of Figure 3 and Table S5. Hepatocytes_Reconstruction.m: Matlab script used to reconstruct human hepatocytes zonation along the lobule axis. The script creates panel 'c' of Figure 4, Figure S4, and Table S7. Cancer_Cells_Spatial_Analysis.m: Matlab script used to calculate differential gene expression between malignant cells found at different zones (malignant border, malignant core, and fibrotic zone) captured by laser microdissection. The script creates panel 'd' of Figure 4 helperFunctions.zip: This folder contains required functions used by the m files. PY - 2030 PB - Zenodo ER -